Biology – Publications

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Publications

2022

  • Prakash, A., Agashe, D., & Khan, I. (2022). The costs and benefits of basal infection resistance vs immune priming responses in an insect. Developmental & Comparative Immunology, 126, 104261. https://doi.org/10.1016/j.dci.2021.104261

2021

  • Krishna, S., & Keasar, T. (2021). Generalization of Foraging Experience Biases Bees Toward Flowers With Complex Morphologies. Frontiers in Ecology and Evolution, 9, 291. https://doi.org/10.3389/fevo.2021.655086
  • Kaur, D., Agrahari, M., Singh, S. S., Mandal, P. K., Bhattacharya, A., & Bhattacharya, S. (2021). Transcriptomic analysis of Entamoeba histolytica reveals domain-specific sense strand expression of LINE-encoded ORFs with massive antisense expression of RT domain. Plasmid, 114, 102560. https://doi.org/10.1016/j.plasmid.2021.102560
  • Singh, N., Naiyer, S., & Bhattacharya, S. (2021). Ultra-structural analysis and morphological changes during the differentiation of trophozoite to cyst in Entamoeba invadens. Molecular and Biochemical Parasitology, 242, 111363. https://doi.org/10.1016/j.molbiopara.2021.111363
  • Awasthi, K., Srivastava, A., Bhattacharya, S., & Bhattacharya, A. (2021). Tissue specific expression of sialic acid metabolic pathway: Role in GNE myopathy. Journal of Muscle Research and Cell Motility, 42(1), 99–116. https://doi.org/10.1007/s10974-020-09590-7
  • Bharadwaj, R., Bhattacharya, A., & Somlata. (2021). Coordinated activity of amoebic formin and profilin are essential for phagocytosis. Molecular Microbiology, 116(3), 974–995. https://doi.org/10.1111/mmi.14787
  • Monteiro, J., Pujari, B., Bhattacharrya, S. M., Raghunathan, A., Keskar, A., Shaikh, A., Bogam, P., Kadu, S., Raut, N., Vavale, D., Mishra, R., Kembhavi, A., Shashidhara, L. S., & Mave, V. (2021). Into the thirteenth Month: A Case Study on the Outbreak Analytics and Modeling the spread of SARS-CoV-2 Infection in Pune City, India (p. 2021.06.22.21259295). https://doi.org/10.1101/2021.06.22.21259295
  • Bogam, P., Joshi, A., Nagarkar, S., Jain, D., Gupte, N., Shashidhara, L. S., Monteiro, J. M., & Mave, V. (2021). Burden of COVID-19 and Case Fatality Rate in Pune India: An Analysis of First and Second Wave of the Pandemic (p. 2021.06.21.21259225). https://doi.org/10.1101/2021.06.21.21259225
  • Rahman, A., & Shashidhara, L. S. (n.d.). Analyzing the influence of IL18 in regulation of YAP1 in breast oncogenesis using cBioportal. Cancer Reports, n/a(n/a), e1484. https://doi.org/10.1002/cnr2.1484
  • Chakraborty, A., Kumar, S., Shashidhara, L. S., & Taneja, A. (2021). Building Sustainable Societies through Purpose-Driven Universities: A Case Study from Ashoka University (India). Sustainability, 13(13), 7423. https://doi.org/10.3390/su13137423
  • Busheri, L., Dixit, S., Nare, S., Alhat, R., Thomas, G., Jagtap, M., Navgire, R., Shinde, P., Banale, R., Unde, R., Reddy, R., Shaikh, S., Konnur, A., Namewar, N., Bapat, A., Patil, A., Johari, R., Kushwaha, R., Kumari, W., …Shashidhara, L.S., Koppiker, C.B.,& Kulkarni, M. (2021). Breast cancer biobank from a single institutional cohort in an urban setting in india: Tumor characteristics and survival outcomes. Cancer Treatment and Research Communications, 28, 100409. https://doi.org/10.1016/j.ctarc.2021.100409
  • Paul, R., Giraud, G., Domsch, K., Duffraisse, M., Marmigère, F., Khan, S., Vanderperre, S., Lohmann, I., Stoks, R., Shashidhara, L. S., & Merabet, S. (2021). Hox dosage contributes to flight appendage morphology in Drosophila. Nature Communications, 12(1), 2892. https://doi.org/10.1038/s41467-021-23293-8
  • Mishra, A., Tung, S., Sruti, V. R. S., Shreenidhi, P. M., & Dey, S. (2021). Desiccation stress acts as cause as well as cost of dispersal in Drosophila melanogaster (p. 2021.03.27.437318). https://doi.org/10.1101/2021.03.27.437318
  • Tung, S., Bakerlee, C. W., Phillips, A. M., Nguyen Ba, A. N., & Desai, M. M. (2021). The genetic basis of differential autodiploidization in evolving yeast populations. G3 Genes|Genomes|Genetics, 11(8). https://doi.org/10.1093/g3journal/jkab192
  • Eckels, E. C., Chaudhuri, D., Chakraborty, S., Echelman, D. J., & Haldar, S. (2021). DsbA is a redox-switchable mechanical chaperone (p. 310169). https://doi.org/10.1101/310169
  • Hazra, D. K., Pujari, B. S., Shekatkar, S. M., Mozaffer, F., Sinha, S., Guttal, V., Chaudhuri, P., & Menon, G. I. (2021). The INDSCI-SIM model for COVID-19 in India (p. 2021.06.02.21258203). https://doi.org/10.1101/2021.06.02.21258203
  • Kumar, V., Vasudevan, A., Venkatesh, K., Maiya, R., Sood, P., Murthy, K., Koushika, S. P., & Menon, G. I. (2021). Cargo crowding, stationary clusters and dynamical reservoirs in axonal transport (p. 2021.03.12.434740). https://doi.org/10.1101/2021.03.12.434740
  • Babu, G. R., Ray, D., Bhaduri, R., Halder, A., Kundu, R., Menon, G. I., & Mukherjee, B. (2021). COVID-19 Pandemic in India: Through the Lens of Modeling. Global Health: Science and Practice, 9(2), 220–228. https://doi.org/10.9745/GHSP-D-21-00233
  • Foy, B. H., Wahl, B., Mehta, K., Shet, A., Menon, G. I., & Britto, C. (2021). Comparing COVID-19 vaccine allocation strategies in India: A mathematical modelling study. International Journal of Infectious Diseases, 103, 431–438. https://doi.org/10.1016/j.ijid.2020.12.075
  • Bagchi, B., Seal, S., Raina, M., Basu, D. N., & Khan, I. (2021). Carcass scavenging relaxes chemical-driven female interference competition in flour beetles. The American Naturalist. https://doi.org/10.1086/717250
  • Seal, S., Dharmarajan, G., & Khan, I. (2021). Evolution of pathogen tolerance and emerging infections: A missing experimental paradigm. ELife, 10, e68874. https://doi.org/10.7554/eLife.68874
  • Bagchi, B., Corbel, Q., Khan, I., Payne, E., Banerji, D., Liljestrand-Rönn, J., Martinossi-Allibert, I., Baur, J., Sayadi, A., Immonen, E., Arnqvist, G., Söderhäll, I., & Berger, D. (2021). Sexual conflict drives micro- and macroevolution of sexual dimorphism in immunity. BMC Biology, 19(1), 114. https://doi.org/10.1186/s12915-021-01049-6
  • Banerjee, S., Chakraborty, S., Sreepada, A., Banerji, D., Goyal, S., Khurana, Y., & Haldar, S. (2021). Cutting-Edge Single-Molecule Technologies Unveil New Mechanics in Cellular Biochemistry. Annual Review of Biophysics, 50, 419–445. https://doi.org/10.1146/annurev-biophys-090420-083836
  • Alonso-Caballero, A., Echelman, D. J., Tapia-Rojo, R., Haldar, S., Eckels, E. C., & Fernandez, J. M. (2021). Protein folding modulates the chemical reactivity of a Gram-positive adhesin. Nature Chemistry, 13(2), 172–181. https://doi.org/10.1038/s41557-020-00586-x
  • Roy, S., Sipthorp, J., Mahata, B., Pramanik, J., Hennrich, M. L., Gavin, A.-C., Ley, S. V., & Teichmann, S. A. (2021). CLICK-enabled analogues reveal pregnenolone interactomes in cancer and immune cells. IScience, 24(5). https://doi.org/10.1016/j.isci.2021.102485
  • Chattopadhyay, B., Forcina, G., Garg, K. M., Irestedt, M., Guerrini, M., Barbanera, F., & Rheindt, F. E. (2021). Novel genome reveals susceptibility of popular gamebird, the red-legged partridge (Alectoris rufa, Phasianidae), to climate change. Genomics, 113(5), 3430–3438. https://doi.org/10.1016/j.ygeno.2021.08.010
  • Garg, K. M., & Chattopadhyay, B. (2021). Gene Flow in Volant Vertebrates: Species Biology, Ecology and Climate Change. Journal of the Indian Institute of Science, 101(2), 165–176. https://doi.org/10.1007/s41745-021-00239-z
  • Chattopadhyay, B., Garg, K. M., Swami Doss, D. P., Vinothkumar, A. K., Kandula, S., Rheindt, F. E., & Ramakrishnan, U. (2021). Cryptic diversity of Rhinolophus lepidus in South Asia and differentiation across a biogeographic barrier. Frontiers of Biogeography, 0(0). https://doi.org/10.21425/F5FBG49625
  • Tan, H. Z., Jansen, J. J. F. J., Allport, G. A., Garg, K. M., Chattopadhyay, B., Irestedt, M., Chilton, G., Gwee, C. Y., & Rheindt, F. E. (2021). Historical climate change and megafaunal extinctions linked to genetic diversity declines in shorebirds (p. 2021.07.02.450884). https://doi.org/10.1101/2021.07.02.450884

2020

  • Ghose, A., Bhattacharya, S., Karthikeyan, A. S., Kudale, A., Monteiro, J. M., Joshi, A., Medigeshi, G., Kang, G., Bal, V., Rath, S., Shashidhara, L. S., John, J., Chaudhuri, S., & Nagarkar, A. (2020). Community prevalence of antibodies to SARS-CoV-2 and correlates of protective immunity in an Indian metropolitan city (p. 2020.11.17.20228155). https://doi.org/10.1101/2020.11.17.20228155
  • Vaid, P. M., Puntambekar, A. K., Banale, R. A., Reddy, R. R., Unde, R. R., Namewar, N. P., Kelkar, D. A., Shashidhara, L. S., Koppiker, C. B., & Kulkarni, M. (2020). Stromal Tumor Infiltrating Lymphocytes (sTILs) as a putative prognostic marker to identify a responsive subset of TNBC in an Indian Breast Cancer Cohort (p. 2020.08.19.20177865). https://doi.org/10.1101/2020.08.19.20177865
  • Nagarkar, S., Wasnik, R., Govada, P., Cohen, S., & Shashidhara, L. S. (2020). Promoter Proximal Pausing Limits Tumorous Growth Induced by the Yki Transcription Factor in Drosophila. Genetics, 216(1), 67–77. https://doi.org/10.1534/genetics.120.303419
  • Chakladar, M., Nair, M. G., Prabhu, J. S., Sridhar, T. S., Kelkar, D., Kulkarni, M., & Shashidhara, L. S. (2020). PTPN11/SHP2 negatively regulates growth in breast epithelial cells: Implications on tumorigenesis (p. 2020.07.30.228445). https://doi.org/10.1101/2020.07.30.228445
  • Groth, C., Vaid, P., Khatpe, A., Prashali, N., Ahiya, A., Andrejeva, D., Chakladar, M., Nagarkar, S., Paul, R., Kelkar, D., Eichenlaub, T., Herranz, H., Sridhar, T., Cohen, S. M., & Shashidhara, L. (2020). Genome-Wide Screen for Context-Dependent Tumor Suppressors Identified Using in Vivo Models for Neoplasia in Drosophila. G3 Genes|Genomes|Genetics, 10(9), 2999–3008. https://doi.org/10.1534/g3.120.401545
  • Kulkarni, A., Kelkar, D. A., Parikh, N., Shashidhara, L. S., Koppiker, C. B., & Kulkarni, M. (2020). Meta-Analysis of Prevalence of Triple-Negative Breast Cancer and Its Clinical Features at Incidence in Indian Patients With Breast Cancer. JCO Global Oncology, 6, 1052–1062. https://doi.org/10.1200/GO.20.00054
  • Nandi, S., Potunuru, U. R., Kumari, C., Nathan, A. A., Gopal, J., Menon, G. I., Siddharthan, R., Dixit, M., & Thangaraj, P. R. (2020). Altered kinetics of circulating progenitor cells in cardiopulmonary bypass (CPB) associated vasoplegic patients: A pilot study. PLOS ONE, 15(11), e0242375. https://doi.org/10.1371/journal.pone.0242375
  • Agrawal, A., Ganai, N., Sengupta, S., & Menon, G. I. (2020). Nonequilibrium Biophysical Processes Influence the Large-Scale Architecture of the Cell Nucleus. Biophysical Journal, 118(9), 2229–2244. https://doi.org/10.1016/j.bpj.2019.11.017
  • Somanathan, H., Krishna, S., Jos, E. M., Gowda, V., Kelber, A., & Borges, R. M. (2020). Nocturnal Bees Feed on Diurnal Leftovers and Pay the Price of Day – Night Lifestyle Transition. Frontiers in Ecology and Evolution, 8, 288. https://doi.org/10.3389/fevo.2020.566964

2019

  • Sharma, S., Agarwal, S., Bharadwaj, R., Somlata, Bhattacharya, S., & Bhattacharya, A. (2019). Novel regulatory roles of PtdIns(4,5)P2 generating enzyme EhPIPKI in actin dynamics and phagocytosis of Entamoeba histolytica. Cellular Microbiology, 21(10), e13087. https://doi.org/10.1111/cmi.13087
  • Agarwal, S., Anand, G., Sharma, S., Rath, P. P., Gourinath, S., & Bhattacharya, A. (2019). EhP3, a homolog of 14-3-3 family of protein participates in actin reorganization and phagocytosis in Entamoeba histolytica. PLOS Pathogens, 15(5), e1007789. https://doi.org/10.1371/journal.ppat.1007789
  • Bhattacharya, A., & Bhattacharya, S. (2019). Patient-driven initiatives for prioritizing drug discovery for rare diseases. Indian Journal of Medical Research, 149(3), 326–328. https://doi.org/10.4103/ijmr.IJMR_499_19
  • Khan, I., Prakash, A., & Agashe, D. (2019). Pathogen susceptibility and fitness costs explain variation in immune priming across natural populations of flour beetles. Journal of Animal Ecology, 88(9), 1332–1342. https://doi.org/10.1111/1365-2656.13030

2018

  • Rajaraman, K., Nair, A., Dey, A., & Balakrishnan, R. (2018). Response Mode Choice in a Multimodally Duetting Paleotropical Pseudophylline Bushcricket. Frontiers in Ecology and Evolution, 6, 172. https://doi.org/10.3389/fevo.2018.00172
  • Khan, I., Prakash, A., Issar, S., Umarani, M., Sasidharan, R., Masagalli, J. N., Lama, P., Venkatesan, R., & Agashe, D. (2018). Female Density-Dependent Chemical Warfare Underlies Fitness Effects of Group Sex Ratio in Flour Beetles. The American Naturalist, 191(3), 306–317. https://doi.org/10.1086/695806

2017

  • Khan, I., Prakash, A., & Agashe, D. (2017). Experimental evolution of insect immune memory versus pathogen resistance. Proceedings of the Royal Society B: Biological Sciences, 284(1869), 20171583. https://doi.org/10.1098/rspb.2017.1583
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